epimodels package

Subpackages

• epimodels.continuous package
  • Submodules
  • epimodels.continuous.models module
  • Module contents
• epimodels.discrete package
  • Submodules
  • epimodels.discrete.models module
  • Module contents
• epimodels.exporters package
  • Submodules
  • epimodels.exporters.vfgen module
  • Module contents
• epimodels.fitting package
  • Submodules
  • epimodels.fitting.base module
  • epimodels.fitting.data module
  • epimodels.fitting.exceptions module
  • epimodels.fitting.objectives module
  • epimodels.fitting.optimizers module
  • epimodels.fitting.utils module
  • Module contents
• epimodels.stochastic package
  • Subpackages
    • epimodels.stochastic.CTMC package
      • Submodules
      • epimodels.stochastic.CTMC.models module
      • epimodels.stochastic.CTMC.solvers module
      • Module contents
  • Module contents
• epimodels.tools package
  • Submodules
  • epimodels.tools.phase module
  • Module contents
• epimodels.validation package
  • Submodules
  • epimodels.validation.specs module
    • DomainType
      • DomainType.CATEGORICAL
      • DomainType.CONTINUOUS
      • DomainType.DISCRETE
      • DomainType.INTEGER
    • ModelConstraint
      • ModelConstraint.expression
      • ModelConstraint.description
      • ModelConstraint.severity
      • ModelConstraint.name
      • ModelConstraint.description
      • ModelConstraint.expression
      • ModelConstraint.name
      • ModelConstraint.severity
    • ParameterSpec
      • ParameterSpec.name
      • ParameterSpec.symbol
      • ParameterSpec.description
      • ParameterSpec.domain_type
      • ParameterSpec.bounds
      • ParameterSpec.dtype
      • ParameterSpec.default
      • ParameterSpec.required
      • ParameterSpec.constraints
      • ParameterSpec.units
      • ParameterSpec.typical_range
      • ParameterSpec.bounds
      • ParameterSpec.constraints
      • ParameterSpec.default
      • ParameterSpec.description
      • ParameterSpec.domain_type
      • ParameterSpec.dtype
      • ParameterSpec.name
      • ParameterSpec.required
      • ParameterSpec.symbol
      • ParameterSpec.typical_range
      • ParameterSpec.units
    • VariableSpec
      • VariableSpec.name
      • VariableSpec.symbol
      • VariableSpec.description
      • VariableSpec.bounds
      • VariableSpec.non_negative
      • VariableSpec.constraints
      • VariableSpec.units
      • VariableSpec.bounds
      • VariableSpec.constraints
      • VariableSpec.description
      • VariableSpec.name
      • VariableSpec.non_negative
      • VariableSpec.symbol
      • VariableSpec.units
  • epimodels.validation.symbolic module
    • SymbolicModel
      • SymbolicModel.add_parameter()
      • SymbolicModel.add_variable()
      • SymbolicModel.analyze_stability_full()
      • SymbolicModel.check_stability_at_dfe()
      • SymbolicModel.compute_R0_next_generation()
      • SymbolicModel.compute_eigenvalues()
      • SymbolicModel.compute_elasticity_indices()
      • SymbolicModel.compute_jacobian()
      • SymbolicModel.compute_sensitivity_matrix()
      • SymbolicModel.define_difference_equation()
      • SymbolicModel.define_ode()
      • SymbolicModel.find_all_equilibria()
      • SymbolicModel.find_disease_free_equilibrium()
      • SymbolicModel.find_endemic_equilibrium()
      • SymbolicModel.get_parameter_symbol()
      • SymbolicModel.get_variable_symbol()
      • SymbolicModel.perform_perturbation_analysis()
      • SymbolicModel.rank_parameter_importance()
      • SymbolicModel.set_total_population()
      • SymbolicModel.substitute_values()
      • SymbolicModel.to_latex()
  • epimodels.validation.validators module
    • evaluate_constraint()
    • validate_initial_condition()
    • validate_parameter_value()
  • Module contents
    • DomainType
      • DomainType.CATEGORICAL
      • DomainType.CONTINUOUS
      • DomainType.DISCRETE
      • DomainType.INTEGER
    • ModelConstraint
      • ModelConstraint.expression
      • ModelConstraint.description
      • ModelConstraint.severity
      • ModelConstraint.name
      • ModelConstraint.description
      • ModelConstraint.expression
      • ModelConstraint.name
      • ModelConstraint.severity
    • ParameterSpec
      • ParameterSpec.name
      • ParameterSpec.symbol
      • ParameterSpec.description
      • ParameterSpec.domain_type
      • ParameterSpec.bounds
      • ParameterSpec.dtype
      • ParameterSpec.default
      • ParameterSpec.required
      • ParameterSpec.constraints
      • ParameterSpec.units
      • ParameterSpec.typical_range
      • ParameterSpec.bounds
      • ParameterSpec.constraints
      • ParameterSpec.default
      • ParameterSpec.description
      • ParameterSpec.domain_type
      • ParameterSpec.dtype
      • ParameterSpec.name
      • ParameterSpec.required
      • ParameterSpec.symbol
      • ParameterSpec.typical_range
      • ParameterSpec.units
    • SymbolicModel
      • SymbolicModel.add_parameter()
      • SymbolicModel.add_variable()
      • SymbolicModel.analyze_stability_full()
      • SymbolicModel.check_stability_at_dfe()
      • SymbolicModel.compute_R0_next_generation()
      • SymbolicModel.compute_eigenvalues()
      • SymbolicModel.compute_elasticity_indices()
      • SymbolicModel.compute_jacobian()
      • SymbolicModel.compute_sensitivity_matrix()
      • SymbolicModel.define_difference_equation()
      • SymbolicModel.define_ode()
      • SymbolicModel.find_all_equilibria()
      • SymbolicModel.find_disease_free_equilibrium()
      • SymbolicModel.find_endemic_equilibrium()
      • SymbolicModel.get_parameter_symbol()
      • SymbolicModel.get_variable_symbol()
      • SymbolicModel.perform_perturbation_analysis()
      • SymbolicModel.rank_parameter_importance()
      • SymbolicModel.set_total_population()
      • SymbolicModel.substitute_values()
      • SymbolicModel.to_latex()
    • VariableSpec
      • VariableSpec.name
      • VariableSpec.symbol
      • VariableSpec.description
      • VariableSpec.bounds
      • VariableSpec.non_negative
      • VariableSpec.constraints
      • VariableSpec.units
      • VariableSpec.bounds
      • VariableSpec.constraints
      • VariableSpec.description
      • VariableSpec.name
      • VariableSpec.non_negative
      • VariableSpec.symbol
      • VariableSpec.units
    • evaluate_constraint()
    • validate_initial_condition()
    • validate_parameter_value()

Submodules

epimodels.exceptions module

Custom exceptions for epimodels.

exception epimodels.exceptions.ValidationError

Bases: Exception

Raised when parameter or initial condition validation fails.

epimodels.formulas module

epimodels.solvers module

Module contents