Getting Started¶

Epimodels offers a variety of deterministic models pre-implemented for Infectious disease modeling. These models are split into discrete (based of difference equations) and continuous (based on Ordinary differential equations).

The APIs exposed for both families of models is identical to facilitate use.

Continuous models¶

import epimodels.continuous.models as CM
model = CM.SIR()
model([1000, 1, 0], [0, 50], 1001, {'beta': 2, 'gamma': .1})
model.plot_traces()

_images/cSIR.png

Discrete models¶

import epimodels.discrete.models as DM
model = DM.SIR()
model(([1000, 1, 0], [0,50], 1001, {'beta': 2, 'gamma': 1}))
model.plot_traces()

_images/dSIR.png