Index

A

add_constraint() (epimodels.BaseModel method) add_parameter() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

add_variable() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) analyze_stability_full() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

B

BaseModel (class in epimodels) BetaGammaR0Mixin (class in epimodels) BetaRR0Mixin (class in epimodels)

bounds (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1]

C

CATEGORICAL (epimodels.validation.DomainType attribute) (epimodels.validation.specs.DomainType attribute) check_stability_at_dfe() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) compute_eigenvalues() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) compute_elasticity_indices() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) compute_jacobian() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

compute_R0_next_generation() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) compute_sensitivity_matrix() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) constraints (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1] CONTINUOUS (epimodels.validation.DomainType attribute) (epimodels.validation.specs.DomainType attribute) copy() (epimodels.BaseModel method)

D

default (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] define_difference_equation() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) define_ode() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) define_parameter() (epimodels.BaseModel method) define_variable() (epimodels.BaseModel method) description (epimodels.validation.ModelConstraint attribute), [1] (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ModelConstraint attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1]

DISCRETE (epimodels.validation.DomainType attribute) (epimodels.validation.specs.DomainType attribute) domain_type (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] DomainType (class in epimodels.validation) (class in epimodels.validation.specs) dtype (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1]

E

epimodels module epimodels.exceptions module epimodels.io module epimodels.registry module epimodels.tools module epimodels.validation module

epimodels.validation.specs module epimodels.validation.symbolic module epimodels.validation.validators module evaluate_constraint() (in module epimodels.validation) (in module epimodels.validation.validators) expression (epimodels.validation.ModelConstraint attribute), [1] (epimodels.validation.specs.ModelConstraint attribute), [1]

F

find_all_equilibria() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) find_disease_free_equilibrium() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

find_endemic_equilibrium() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) fit() (epimodels.BaseModel method) FormulaExtractionError

G

get_model() (in module epimodels) (in module epimodels.registry) get_parameter_symbol() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

get_variable_symbol() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

I

INTEGER (epimodels.validation.DomainType attribute) (epimodels.validation.specs.DomainType attribute)

L

list_models() (in module epimodels) (in module epimodels.registry)

load_model() (in module epimodels.io)

M

model_constraints (epimodels.BaseModel attribute) model_from_dict() (in module epimodels.io) model_name (epimodels.FormulaExtractionError attribute) model_to_dict() (in module epimodels.io) model_type (epimodels.BaseModel attribute) ModelConstraint (class in epimodels.validation) (class in epimodels.validation.specs) Models SEIR SEIS SIpRpS SIR SIRS SIS typology

module epimodels epimodels.exceptions epimodels.io epimodels.registry epimodels.tools epimodels.validation epimodels.validation.specs epimodels.validation.symbolic epimodels.validation.validators

N

name (epimodels.BaseModel attribute) (epimodels.validation.ModelConstraint attribute), [1] (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ModelConstraint attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1]

non_negative (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1]

P

param_values (epimodels.BaseModel attribute) (epimodels.BetaGammaR0Mixin attribute) (epimodels.BetaRR0Mixin attribute) parameter_specs (epimodels.BaseModel attribute) parameter_table() (epimodels.BaseModel method)

parameters (epimodels.BaseModel attribute) ParameterSpec (class in epimodels.validation) (class in epimodels.validation.specs) perform_perturbation_analysis() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) plot_traces() (epimodels.BaseModel method)

R

R0 (epimodels.BetaGammaR0Mixin property) (epimodels.BetaRR0Mixin property) rank_parameter_importance() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

reason (epimodels.FormulaExtractionError attribute) register_model() (in module epimodels.registry) required (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] reset() (epimodels.BaseModel method)

S

save_model() (in module epimodels.io) set_total_population() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method) severity (epimodels.validation.ModelConstraint attribute), [1] (epimodels.validation.specs.ModelConstraint attribute), [1] simulate() (epimodels.BaseModel method) state_variables (epimodels.BaseModel attribute) substitute_values() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

suggestion (epimodels.FormulaExtractionError attribute) summary() (epimodels.BaseModel method) symbol (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1] symbolic_model (epimodels.BaseModel attribute) SymbolicModel (class in epimodels.validation) (class in epimodels.validation.symbolic)

T

to_dataframe() (epimodels.BaseModel method) to_dict() (epimodels.BaseModel method) to_latex() (epimodels.validation.symbolic.SymbolicModel method) (epimodels.validation.SymbolicModel method)

traces (epimodels.BaseModel attribute) typical_range (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1]

U

units (epimodels.validation.ParameterSpec attribute), [1] (epimodels.validation.specs.ParameterSpec attribute), [1] (epimodels.validation.specs.VariableSpec attribute), [1] (epimodels.validation.VariableSpec attribute), [1]

unregister_model() (in module epimodels.registry)

V

validate_initial_condition() (in module epimodels.validation) (in module epimodels.validation.validators) validate_initial_conditions() (epimodels.BaseModel method) validate_parameter_value() (in module epimodels.validation) (in module epimodels.validation.validators)

validate_parameters() (epimodels.BaseModel method) validate_time_range() (epimodels.BaseModel method) ValidationError variable_specs (epimodels.BaseModel attribute) VariableSpec (class in epimodels.validation) (class in epimodels.validation.specs)